在使用pdb2gmx创建模拟分子系统之后，可以使用editconf为你的分子画一个盒子。也可以认为使用editconf把分子放进一个盒子中，这样，你就可以往盒子里面添加水分子，离子，或者其他溶剂等等了。
使用“ eidtconf -h ”可以看到editconf的参数，其中比较常用的有以下几个：
----------------------------------------------------------
-f 指定你的坐标文件。
-n 分子系统的索引文件。索引文件是gromacs一个十分突出的功能，刚接触有点复杂，但是功能相当强大。
-o 输出文件，即放进盒子里面的分子系统。
-bt 盒子类型，有正方型，长方形，八面型等等，看个人需要跟癖好啦。
-box 自定义盒子大小，需要三个长度，即X、Y、Z三个方向的长度。
-d 分子离盒子表面的最短距离。这个跟-bt一起使用，基本就足够了;如果蛋白在模拟过程尺寸变化很大，那就用-box吧。
-center 确定哪一部分分子放在盒子中心，如果和索引文件一起使用，可以非常详细的定义分子的位置。
-translate 平移分子，跟X、Y、Z三个方向，随便移动。可以参考我前面一篇关于加大盒子的e文文章，练习e文，不好意思。
-rotate 转动分子，还是三个方向。我觉得editconf开发者太有才，什么都想到了，我想要什么，他就有什么，以后遇到他，我会让他给我签名。
-princ 这个参数可以用来对齐分子，比如使分子沿X轴对齐。举一个例子吧，比如你想将分子中两个残基沿Y轴对齐，那么就在索引文件中将这俩个残基标记以下，然后使用-princ，根据提示走就能对齐分子啦。
----------------------------------------------------------
由于gromacs的很多命令都可以接受不同的文件类型，editconf也有其他功能，如和trjconv一样进行gro和pdb的转化：
editconf -f sen.pdb -o sen.gro
或者
editconf -f sen.gro -o sen.pdb
我觉得我要好好看语文，都并不知道怎么结束这样一篇实用性这么强的作文。悲哀~~
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